In this workshop, we introduce gene set analysis relevant to RNA-sequencing data. In it, we cover:
- Broad Molecular Signatures Database (MSigDB) gene sets
- hypergeometric enrichment with clusterProfiler
- gene set enrichment analysis (GSEA) with fgsea
Materials
https://github.com/hawn-lab/workshops_UW_Seattle/tree/master/2021.07.14_GSEA